Publications

  1. Gonzalez-Ferrer, J, Lehrer, J. , O’Farrell, Paten, B., Teodorescu, M., Haussler, D., Jonsson, VD#, and Mostajo-Radji,MA#. "SIMS: A Deep Learning Label Transfer Tool for Single-Cell RNA Sequencing Analysis." Cell Genomics (2024) #co-senior authors

  2. Poscablo, Donna M., et al. "An age-progressive platelet differentiation path from hematopoietic stem cells causes exacerbated thrombosis." Cell (2024).

  3. Mok, L., … ,Zappasodi, R., Jonsson, V., “A pan-cancer multi-omic immune single-cell atlas for cancer immunotherapy: Focus on CD4+ T cells”, JITC (2022)

  4. Bucktrout, S., et al., Advancing T cell-based cancer therapy with single cell technologies, Nature Medicine (2022).

  5. Yamaguchi, Y., Gibson, J., Ou, K., Ng, R. H., Jonsson, V. D., Zarif, J. C., ... & Priceman, S. J. “PD-L1 blockade restores CAR T cell activity through IFNγ-regulation of CD163+ macrophages”, Journal for Immunotherapy of Cancer (2022).

  6. Jonsson, V. et al., “CAR T cell therapy drives endogenous locoregional T cell dynamics in a responding patient with glioblastoma”, (in review).

  7. Peng, K. et al. “Diversity in immunogenomics: the value and challenge”, Nature Methods (2021).

  8. Dullerud, N. et al. “Feature selection and optimization to constrain anti-SARS-CoV2 design and viral escape”, NeurIPS, (2020).

  9. Dullerud, N. and Jonsson, V. “Cellular immunotherapy treatment scheduling to address antigen escape”, IEEE CDC, (2020).

  10. Chhugani, K., et al. “Overview of challenges and opportunities of computational data-driven research in biology”, (in review).

  11. Stern, L, Jonsson, V., Priceman, S., “CAR T Cell Therapy Progress and Challenges for Solid Tumors”. Cancer Treat Res., (2020).

  12. Jonsson, V., et al. "Novel computational method for predicting polytherapy switching strategies to overcome tumor heterogeneity and evolution." Scientific Reports (2017).

  13. Giordano, G. Rantzer, A. and Jonsson, V. “A convex optimization approach to cancer treatment to address tumor heterogeneity and imperfect drug penetration in physiological compartments.”, IEEE Conference on Decision and Control, (2016).

  14. Jonsson V., “Robust Control of Evolutionary Dynamics”, Caltech thesis.

  15. Jonsson V., Matni N., Murray R.M., “Synthesizing Combination Therapies for Evolutionary Dynamics of Disease for Nonlinear Pharmacodynamics”, IEEE Conference on Decision and Control, (2014).  

  16. Jonsson V., Rantzer, A. and Murray R.M., “A Scalable Formulation for Engineering Combination Therapies for Evolutionary Dynamics of Disease”, American Control Conference, (2014).

  17. Jonsson V., Matni N., Murray R.M., “Reverse Engineering Combination Therapy for Evolutionary Dynamics of Disease”, IEEE Conference on Decision and Control, (2013). 

  18. Chaudhuri, Aadel A., …, Jonsson, V., et al. "Oncomir miR-125b regulates hematopoiesis by targeting the gene Lin28A." Proceedings of the National Academy of Sciences 109.11 (2012): 4233-4238.

  19. Shahabuddin,M., Murray,A.,Jonsson, V., Component-based, run-time flight software modification, IEEE Aerospace Conference, (2008).

  20. Aly, M., Burdick, JW, Jonsson, V., Di Caraino, S., Lindzey, L., Ma, J., Murray, RM, Petras,R., Pfister, S., Rizzo, D., Wongpiromsarn, T., Sensing, Navigation and Reasoning Technologies for the DARPA Urban Challenge, (2007). 

  21. Rouquette, N., Wasserman, G., Jonsson, V., OWL for Space Mission Systems Development at JPL with Semantic Architecture Styles, Technical Report, Jet Propulsion Laboratory, National Aeronautics and Space Administration, (2005). 

  22. Dvorak, D., Bollela, G., Canahm, T., Jonsson, V., Champlain, V., Giovannoni, B., Indictor, M., Meyer, K., Murray, A., Reinholtz, K., Project Golden Gate: Towards Real-Time Java in Space Missions, 7th IEEE International Symposium on Object-Oriented Real-time Distributed Computing, Vienna, Austria, (2004). 

  23. Bollela, G., Canham, T., Jonsson, V., Champlin, V., Dvorak, D., Giovannoni, B., Indictor, M., Meyer, K., Murray, A., Reinholtz, K., Programming with non-heap memory in the real time specification for Java, 8th annual ACM conference on Object-oriented programming, systems, languages, and applications, (2003). ACM, New York, NY, USA, 361-369